best way to find downstream effects of insertion
1 answer
Yest It is and here is another tool that also do a good job
SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).
Log in to answer this question.
More posts like this
-
RNA splicing analysis
written by shafi98 •
-
Determine Reading Frame from Exon Genomic Positions (rMATS)
written by QVINTVS_FABIVS_MAXIMVS
-
retrieve AA sequence change from a frameshift mutation
written by cocchi.e89
-
Alternate Splicing using Limma
written by thal.kan49 •
-
Defining LoF mutations with Annovar
written by QVINTVS_FABIVS_MAXIMVS
-
Identify target miRNA for a mRNA
written by Bioinformatist Newbie
-
Annotating if a truncating variant escapes nonsense mediated decay
written by janson.white17 •
-
Differential expression level of different exons from RNA-seq indicates what?
written by biomedicineman1 •
-
Obtaining All Cds Sequences (I.E. All Spliced Exon Variants) From Ucsc
written by Max
-
How To Assess The Effect Of Snps Based On Multiple Transcripts ?
written by Khader Shameer
The best way is probably cDNA sequencing, qPCR and western blot...