TCGAquery function from TCGAbiolinks
Hi all,
I am interesting in using TCGAbiolinks package for data analysis but I am only starting to learn how to use R. I have already installed TCGAbiolinks package but I am having problems in downloading the data. This one is the example to filter the search by platform using the platform parameter but I am obtaining always the same error..
query <- TCGAquery(tumor = "paad", platform = "HumanMethylation450") Error: could not find function "TCGAquery"
Is this function not suppose to be included in TCGAbiolinks package?
Thank you in advance for your help.
• 4,001 views
•
link
updated
by
Chip
•
written
by
inesfaleiro.9 •
•
written
by
inesfaleiro.9 •
1 answer
Log in to answer this question.
More posts like this
-
GDCprepare() fails for TCGA-LAML: Error in dplyr::select - Column `disease_response` doesn't exist
written by amirnavidinia2014 •
-
Error in summarizing data with summarizedExperiment due to differece in data sizes
written by IK_Afif •
-
TCGA metastasis ID
written by sabin •
-
PHATE Clustering Error
written by fouerghi20 •
-
PHATE Clustering Error
written by fouerghi20 •
-
TCGAbiolinks problem downloading ASCAT2 data
written by berry •
-
How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
written by nazaninhoseinkhan
-
GDCprepare stop working for some unknown reason
written by ansari.sarabio •
-
Reading Clariom D Human CEL files results in missing CDF enviroment error
written by jonifg •
-
Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
written by user31888
