This is a test version of Biostars. For the public version, visit https://www.biostars.org.
UPARSE (no such file or directory)

G/Day,

I'm new in bioinformatics. I have been learning UPARSE through its tutorials. I'm using Cygwin and had installed the necessary packages (Curl). When using the HMP tutorial. I'm stuck at the "create utax database".

When i try to ran the command as displayed. An error message : -bash: cd: /home/ówner/tutorials/hmptut/scripts./setup_utax.bash: No such file or directory . I have checked that, the .bash scripts is in the directory. Any feedback is appreciated. Thanks.

Regards, G.

ngs 16s
• 1,928 views • link
updated by Devon Ryan Devon Ryan • written by goh • goh

Have you checked the directory exists:

/home/ówner/tutorials/hmptut/scripts./

You have a dot after scripts - is that supposed to be there?

• 0 views • link
written by Tonor Tonor

1 answer

You can cd into a directory, but not into a file. Presumably you meant cd /home/ówner/tutorials/hmptut/scripts and then ./setup_utax.bash as separate commands.

• 0 views • link
written by Devon Ryan Devon Ryan

Thanks for the help. It worked.

• 0 views • link
written by goh • goh

Log in to answer this question.

More posts like this