This is a test version of Biostars. For the public version, visit https://www.biostars.org.
SNP annotation in non model animals

hi every one

i get millions snp from NGS data (camel genome), now i would to annotate these variants

What way to do this, you recommend?

snp next-gen
• 2,342 views • link
updated by Biostar Biostar • written by reza reza

Could be helpful if you mention the aim of your analysis and the type of annotation you aim to obtain.

• 0 views • link
written by WouterDeCoster WouterDeCoster

i want to identify genic and intergenic snp, synonymous and non-synonymous snp and other annotation like this

• 0 views • link
written by reza reza

1 answer

Look at these sources, they may be helpful.

Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.

https://www.ncbi.nlm.nih.gov/pubmed/23390980

These authors (above) compare model and non-model organisms in terms of SNP-findings.

These papers below are about some camel research:

Genome sequences of wild and domestic bactrian camels

http://sci-hub.cc/10.1038/ncomms2192#

Identification of SNPs and their validation in camel (Camelus bactrianus and Camelus dromedarius)

http://iosrjournals.org/iosr-javs/papers/vol7-issue2/Version-2/J07226570.pdf

Sequencing, Analysis, and Annotation of Expressed Sequence Tags for Camelus dromedarius

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0010720

Estimating the Population Mutation Rate from a de novo Assembled Bactrian Camel Genome and Cross-Species

Comparison with Dromedary ESTs

http://jhered.oxfordjournals.org/content/early/2014/06/05/jhered.est005.full.pdf

The de novo genome assembly and annotation of a female domestic dromedary of North African origin

http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12443/pdf

• 0 views • link
written by natasha.sernova natasha.sernova

Log in to answer this question.

More posts like this