Finding downstream Gene Closest To A Given Location
Hi,
I am trying to find genes closest only downstream to a bed file. I am using
bedtools closest -d -a Seq.bed -b Bed_GTF_neg.bed
but it is giving me both upstream and downstream regions, is there anyway to get only the downstream regions?
Thanks!
1 answer
From the BEDtools 'closest' webpage:
-iu = ignore upstream
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harold.smith.tarheel
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