Entering edit mode
7.5 years ago
saranpons3
▴
70
Hello All, I know that we have the following de novo assembly approaches for assembling the reads from NGS technology. Taken the list from this paper (http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6616523)
1) Graph based (Overlap-Layout-Consensus, De Bruijn Graph)
2) Seed Extension (Some examples: SSAKE, VCAKE)
3) String graph (Efficient construction of an assembly string graph using the FM-index)
Do we have any other approaches besides the listed above approaches?
Thanks in advance.