Calling SNPs across different genome versions
I'm new to working on genomic level data so was hoping someone could help with this. Sorry if it's a daft question!
I have a list of SNPs that I want to call on the cat genome version 8_0. However, the reference locations of these are from a former genome version which is no longer available. The latest version is longer and therefore, I would assume, the SNP locations I have would not output the correct calls with v8_0. Is there any way round this?
Cheers
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WouterDeCoster
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Schmendrick •
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Schmendrick •
1 answer
You can use UCSC liftover to convert coordinates between genome builds.
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