How to phase my genome from FamilyTreeDNA to haplotypes
Good day! Im Alex and I like a bioinformatic!
I need a help for a phasing my results from FTDNA.
I converted RAW-data to 23andme-format and it to PLINK-format (.ped, and .map).
If you interesting, I used for convertation a UNIX-script (worked under Cygwin):
see here FTDNA to 23andme.
Then I 23andme-format converted to PLINK by Perl script
see here
Now I want to phase my genotypes against CEU-panel. But I have a questions: 1. What of program is good for phasing-Beagle, Phase or SNPHAP, or other? 2. How download a list of SNPs for a any region of chromosome via 1000genomes NCBI-browser? Am I need to download CEU-panel from browser or no?
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alexey.minko •
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