Using esearch/efetch to download microbial genomes from a list of taxon id
I have a .txt file with a list of 200 taxon IDs and would like to download the genomes from NCBI using esearch and efetch.
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muslih14 •
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Be more specific about what you want. Do you want all genomes pertaining to each taxon ID or maybe just the reference genome? To what assembly level do you want them?
In addition, what have you tried yourself to make this happen?