This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Retrieve sequences from uniprot

Dear all, I would like to retrieve sequences + isoforms from Uniprot

Here my code :

import requests params = {"query": "P00750", "format": "fasta"} response = requests.get("http://www.uniprot.org/uniprot/", params) print (response.text)

But unfortunaltely it is giving me one sequence, I would like to add ?include=yes

Any idea ?

Mohamed

uniprot sequences retrieve
• 3,559 views • link
updated by Mahmut Uludag • Mahmut Uludag • written by k.mamoud • k.mamoud

params = {"query": "P00750", "format": "fasta", "include": "yes"}

• 0 views • link
written by Eric Lim Eric Lim

1 answer

Following version of your code returns sequences+isoforms:

import requests
params = {"query": "P00750", "format": "fasta", "include": "yes"}
response = requests.get("http://www.uniprot.org/uniprot/", params=params)
print (response.text)
• 0 views • link
written by Mahmut Uludag • Mahmut Uludag

Log in to answer this question.

More posts like this