Install gmap error
Hello everyone, Have you appear this error while install the gmap:
/tmp/cc2iVb9u.s: Assembler messages:
/tmp/cc2iVb9u.s:1615: Error: no such instruction: `vperm2i128 $32,%ymm2,%ymm1,%ymm0'
/tmp/cc2iVb9u.s:1616: Error: no such instruction: `vperm2i128 $49,%ymm2,%ymm1,%ymm2'
/tmp/cc2iVb9u.s:1617: Error: suffix or operands invalid for `vpshufd'
/tmp/cc2iVb9u.s:1618: Error: suffix or operands invalid for `vpshufd'
/tmp/cc2iVb9u.s:1619: Error: suffix or operands invalid for `vpunpcklqdq'
/tmp/cc2iVb9u.s:1620: Error: suffix or operands invalid for `vpunpckhqdq'
/tmp/cc2iVb9u.s:1622: Error: no such instruction: `vextracti128 $0x1,%ymm2,16(%r12,%rdx)'
/tmp/cc2iVb9u.s:1624: Error: no such instruction: `vextracti128 $0x1,%ymm0,16(%r13,%rdx)'
make[2]: *** [gmap_avx2-intlist.o] Error 1
make[2]: Leaving directory `/public1/home/stu_wzhong/gmap-2016-04-04/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/public1/home/stu_wzhong/gmap-2016-04-04/src'
make: *** [all-recursive] Error 1
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Quite a cryptic error, to me it's not clear what's wrong. But I know the author is very responsive to emails, so maybe he can help you.
What OS is this? Are you using a non-standard CPU (non-intel/AMD)?
I agree with @Wouter. Your best bet may be to contact GMAP authors with this error.
I doubt the author will help you attempt to install a version from April. Why not get the latest version and retry ?
There seems to be a problem with avx, which your server perhaps does not support ? https://en.wikipedia.org/wiki/Advanced_Vector_Extensions
Thanks for your help and I will present the problem to the authors.