aptamer alingment to find out the similarity?
I have two aptamer sequence( it is DNA sequence about 38 nucleotides) I want to check these two sequence about their loops,stems and similarity in their sequence? is there any online software help me about it? to find out how many nucleotides are similar between them.
Thank you so mucj
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How is sequence similarity different than percent identity from BLASTP?
written by Viraj •
-
Dataset to help benchmark approximate string matching algorithm?
written by amirouche.boubekki •
-
DNA barcode pair distance.
written by vinaykusuma •
-
online software for sliding window analysis
written by plrg1970 •
-
What algorithms and software tools are implemented in DNA similarity search and match databases lik…
written by plantgenomics •
-
Use NCBI WP_ non-redundant protein to find out the genome accession number
written by horsedog •
-
Any suggestion for combining different types of scores
written by Na Sed
-
2D and 3D structure of ssDNA
written by Samane •
-
similarity of 3D and sequential structure of protein in three bacteria?
written by Samane •
-
How To Perform A Codon Usage Analysis
written by Samane •
Dear Samane, Hi
I have heard that there is not any specially-designed tool for this purpose and most researchers usually use autodock or haddock or RNAstructure and maybe fasTAptamer.