Hi there,

I'm having a problem with running vcf-creator. Any idea what's happening? Here's the output

./run_VCF_creator.sh -I -f disco_13g-types_k_31_c_auto_D_6_P_4_b_0_coherentBWA_MEM.sam -o disco_13g-types.vcf ...

...Skipping alignment phase...

File "/global/software/DiscoSNP++-2.2.9/scripts/VCF_creator.py", line 59

except getopt.GetoptError as e: ^

SyntaxError: invalid syntax there was a problem with the VCF creation (command was "python /global/software/DiscoSNP++-2.2.9/scripts/VCF_creator.py -s disco_13g-types_k_31_c_auto_D_6_P_4_b_0_coherentBWA_MEM.sam -o disco_13g-types.vcf "

Thanks for your help,

Lester