get biotype of lncRNA

Confusion about different IDs
written 1.8 years ago by zizigolu 438

Hi You imagine I have this gene `ENSG00000260958` If you search, you will find several IDs for that like LOC105371200 AC023824.3 AC023824.6 HSALNG0111081 RP11-488I20.8 RP11-244B22 …
RNA interaction network analysis
written 4.7 years ago by Archit 0

Hi. So I have performed differential expression (DE) for mRNA, miRNA, and lncRNA of a control and a cancer cell line. I have one file …
circos plot for lncRNA distribution across the chromosome
written 7.2 years ago by BioBaby 2

hi all, I want to make circos plot. basically I want to represent my mRNA and lncRNA on across chromosomes. I searched a lot but …
How to identify lncRNAs from a probe set?
written 7.3 years ago by dz2353 12

Hi, there, I downloaded a microarray from the GEO database. The platform is GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]. I …
Difficulty Converting lncRNA gene symbol to Ensembl
written 7.6 years ago by JourneyToAbyss 25

I have many lncRNA gene symbols, which I am trying to convert to Ensembl ID. Much of the difficulty stems from not knowing where these …
Ensembl ID conversion - other than Uniprot
written 7.9 years ago by NS 1

Hi all, I have a list of ensembl IDs, and I normally use Uniprot ID conversion to convert them. The Uniprot server seems to be …
Classifying DEGs based on the tissue where it is expressed
written 9.0 years ago by Sreeraj Thamban 31

Hi, Biostars, I have a list of differentially expressed genes after RNASeq analysis. I wanted to classify them based on the tissue where they are …
Input data for co-expression network by cytoscape
written 9.6 years ago by Edalat 5

hi, I need help to prepare input data for cytoscape,or recommended tutorial as a sample. For Co-Expression(Network) Analysis, I calculated correlation by R.so I have …
Duplicate row.names of lncRNA
written 9.9 years ago by elhamdallalbashi 2

I want to do meta analysis for lncRNA,but there is this error : Duplicate row.names are not allowed so 35 genes that are duplicate were …
detect lncRNA by clc
written 10.1 years ago by Edalat 5

Hi everybody, I want detect lncRNA from some human (control and treatment) RNA-seq data ( Illumina sequencing data) in fastq format, I detect genes and …