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Plot chromossomes in R

Hello guys

could someone tell me a way to build charts in R using the coordinates of the chromosomes of the species of interest to me?

For example:

Chromosome size (bp)

1 225639

2 185475

3 306582

.

.

Thanks

r plot
• 2,244 views • link
updated by ssv.bio ssv.bio • written by ricardo • ricardo

2 answers

You could try:

df = data.fram (chromosome = c(1:22), size_bp = c( 225639, ....))
ggplot(data = df, aes(x = chromosome, weight = size_bp)) + geom_bar()

hth

• 1 views • link
written by H.Hasani H.Hasani

did you try chromplot? there are multiple packages in R (including circos) for plotting chromosomes in R/bioc.

• 1 views • link
written by ssv.bio ssv.bio

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