Generate gene correlation network from mirna data
Hello guys,
I would like to generate a gene correlation network where the data is mirna expression.
To help in this process , I have the mirna-genes targets data. However, I checked these data and I was able to observe that there are some mirna for a gene, thus how can a gene bind to a specific miRNA or vice-versa?
About the network correlation , I'm using spearman correlation where the correlations above 0.8 are 1 and below 0.8 is 0 in the correlation matrix.
Does anyone have an idea to proceed this?
Thank you very much.
• 2,521 views
•
link
updated
by
WouterDeCoster
•
written
by
carlos_marchi
•
written
by
carlos_marchi
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Spearman correlation for ATAC data
written by daffodil •
-
Gene correlation with single cell data?
written by theodore.killian •
-
WGNCA and gene expression
written by mzezza •
-
WGCNA and microarray gene expression
written by mzezza •
-
filtering genes by pearson correlation
written by mannoulag1
-
Predicting binding probability of circRNA and miRNA
written by ResearchR
-
get correlation matrix from principal component analysis in python
written by carlos_marchi
-
Forum: Data integration between gene expression - RNAseq and DNA methylation - Illumina 450k
written by carlos_marchi
-
miRNA-Target coexpression and network
written by Prasad
-
Expected Correlation Between Exon Array And Rna-Seq
written by polarise
For network correlation have a look on WGCNA.