merge pdb chains
Hello,
I am looking for tool/script that will modify a multiple chain (domain) pdb and merge all of the chains into a single chain and then renumber all of the residues and atoms so there are no clashes. I have spend a day looking without success so thought it may be better to post. Any ideas welcome. Thanks.
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galleria123 •
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galleria123 •
1 answer
Try this: https://github.com/JoaoRodrigues/pdb-tools
More specifically, this will extract chains A and B from your pdb, rename them to chain A, and renumber the residues sequentially from 1.
pdb_selchain.py -AB your.pdb | pdb_chain.py -A | pdb_reres.py -1 > new.pdb
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