why i did not get the output file when i finished running the LTRfinder?
why i did not get the output file when i finished running the LTRfinder? and i use Arabidopsis thaliana‘s tRNA as a library. my own genome seq is a mushroom the shell as following: /home/wangyf/waresoft/LTR_FINDER.x86_64-1.0.5/ltr_finder -w 2 -s /home/wangyf/waresoft/LTR_FINDER.x86_64-1.0.5/tRNAdb/araTha1-tRNAs.fa /home/wangyf/repeat/MG122_95kmer.fa 1>ltr.log 2>ltr.err
any idea? thank u !
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yifan wang •
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What do
ltr.logandltr.errcontain? Sometime programs write output to standard error and what you are looking for may have ended up in one of those files.Predict protein Domains 0.000 second
like this . there is no err information
It appears that the program worked as expected but did not find any LTR transposons.
yes, but what wired is yesterday i asked my friend help me to run ltr_finder in another machine which is a centralization supercomputing sever, it worked and get results. LOL...