How to delete not necessary tools from the local Galaxy instance? I want to use Galaxy as the backend for WGS microbe data processing and leave only few genome aligners and variant callers and add some R scripts and Python to represent a report tables. Need an advise on how to do that. Thx.
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valentina_stepanenko •
Just uninstall anything not needed and/or remove it from the tool panel by modifying the xml files.
As an aside, you probably meant to ask this on the Galaxy site.
Thank you. Should I change tool_conf.xml.main file and remove not applicable tools and no more changes are required? And may I run the resultant Galaxy instance as a frontend on a conventional web hosting?
You'll want to edit tool_conf.xml and shed_tool_conf.xml, assuming you don't have anything in local_tool_conf.xml that needs to go.
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Go here
https://wiki.galaxyproject.org/Admin/Training/ISMB2010%20Galaxy%20Tutorial%3A%20Running%20Your%20Own
and find "This file contains everything necessary to defined the user interface of the tool"