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Fst outlier test for pooled data
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18 months ago
AP • 90

Hi all,

Is anyone aware of a empirical Fst outlier detection test for pooled data? I am not sure if the "regular" permutation, likelihood tests can be used for poolseq data since individual informations are not present.

Thanks!

Fst poolseq • 1.2k views
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Entering edit mode
18 months ago
AP • 90

8 months later. Popoolation does the job of calculating Fst for you. One could remove outliers "by hand" by filtering the output file for Fst > 0.5 for instance.

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