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Getting a list of genes expressed

Hello! I am trying to look at genes that are expressed in a population of cells without comparing to another cell's transcriptomic data (obtained through RNAseq). Does anyone have any suggestions for which tool might be best to get a list of genes that are expressed sorted according to expression level?

Thanks!

rna-seq transcriptome
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updated by Devon Ryan Devon Ryan • written by snp87 • snp87

I guess use edgeR and perform a cutoff on the CPM

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written by Nicolas Rosewick Nicolas Rosewick

1 answer

Have a look at the zFPKM paper, since that's a method directly for this.

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written by Devon Ryan Devon Ryan

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