SNP data in bacteria
I have RNA -seq data for some strains of bacteria, and with this data i obtain using software SamTools i have all the polymorphism (SNPs) data.
With that, I I would like to know about analyzes in silico that can be made using this data.
thank you
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What do you aim to accomplish? What is the desired result?
This is not a direct answer to your question, cause you need to answer first @WouterDeCoster question.
But this is a general overview of what you can do with your data and the tools that will help you to accomplish that with nice workflow that you can navigate with.
RNA-SEQ ANALYSIS