what is R shiny application is used for and how to load it in a webpage ?
Hi , I have project, in which i do RNA-seq analysis . I am a beginner in these staff , i have also to build a web page shows my results , i knew that i have to use Rshiny application but i do not know what is used for and how can i load it in a webpage ?
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roonymoonlight •
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How much time do you have to complete your project? Do you have any experience with programming in general and R specifically?
i know R , what it used for but i am not confident with
Please give us more details:
The more info you give us, the better we can help you.
I know R , but I am not confident with . The data that i wish to display is the the outputs , or the result that i will get from Tophat and cufflinks. now I am trying to download it from rstudio packagemanger on my computer (linux). My friend have downloaded and this is how it look like in pic below https://www.dropbox.com/s/fq3cw4csmf2qwxc/Rshiny.png?dl=0
Please edit your question and add these details in there. Also, read the RShiny tutorial and the package from Devon's comment - they should give you instructions on transforming RNA seq datasets into plots for the web.
RShiny is a web application platform for R. You can think of it like PHP. You will need to read the RShiny tutorials to get yourself started.
Have a look at the "ReportingTools" package from bioconductor. They have examples on creating Shiny apps with it for edgeR and DESeq2 output. You should be able to apply that to the output from cufflinks too, though I suspect using cummeRbund with shiny will prove easier.
A better question is why you really need things in a web page...