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creating .gff files from myRAST

Hi

I am using myRAST to annotate my sequenced genomes. How do I convert the outputs, .txt or .fasta into gff format?

Thanks

myrast annotation gff
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written by natasha natasha

If you only get a fasta output I'm afraid you cannot have easily a gff file. You should somehow align your fasta sequences against the genome to retrieve the position (and splicing if there is). You could use exonerate or GMAP to accomplish that. But doing that you might loose some details.

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written by Juke34 Juke34

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