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no merged gtf file after running cuffmerge

I am analyzing the transcriptome of arabidopsis and everything worked well till the cuffmerge. After running the cuffmerge i didnt get the merged gtf file.

next-gen rna-seq rna-seq
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updated by GenoMax 16K • | written by naveenlalosharma 0

Was there an error? What command did you use to run cuffmerge?

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written by GenoMax 16K

there is no error. /home/naveen/Desktop/cufflinks-2.2.1.Linux_x86_64/cuffmerge -g /home/naveen/Desktop/Tamips_transcriptome_analysis/AtRTD2_19April2016.gtf -s /home/naveen/Desktop/Tamips_transcriptome_analysis/genomeindex/Genome -p 50 /home/naveen/Desktop/Tamips_transcriptome_analysis/cuffdiff_out/assemblies.txt

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written by naveenlalosharma 0

Did you solve the problem? I have same issue :'(

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written by bioinfo 1

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