This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to do the gene fusion analysis of the plant species

I want to try using the RNA-seq data to do the gene fusion analysis in plant. I noticed that most of the recently researches are on human. So whether it is possible to apply similar studies on plants?

gene fusion
• 2,575 views • link
updated by igor igor • written by mqding • mqding

2 answers

Hope somebody can help me out

• 1 views • link
written by mqding • mqding

Most of the fusion detection tools will take in any reference, regardless of species. For example, TopHat has been used for many different species. TopHat-Fusion is incorported into TopHat2 and is for fusion detection specifically.

You should look at publications from other people working on your species (or a similar species) and see what they use.

• 1 views • link
written by igor igor

Log in to answer this question.

More posts like this