gold standard for human genome genotyping · Biostar

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gold standard for human genome genotyping

Hi all! I am evaluating the performance of our INDEL calling tool and comparing with others.I am using the INDELs dataset identified by Ryan Mills et al.( doi:10.1101/gr.115907.110) as the gold standard. However, I only found one available vcf file of the gold standard,"Mills_and_1000G_gold_standard.indels.b37.sites.vcf". But it seems this vcf file does not contain sample's GT field (according to the paper, they used 79 human genome samples from 1k human genome project). Do you know is there any other version of vcf file showing each samples' GT info?

Thanks!

Cathy

indel genotyping 1k human genome dataset

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updated 9.8 years ago by Biostar

• written 10.1 years ago by watermelon1037 •

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