RNAseq reads mapped to the gene
Hi,
I work on plant species. I have used STAR to map RNAseq reads and featureCounts to get expression values. I would like to counts the number of reads map to the genes and outside of genes. Is there any tool or script to get this estimate?
Thanks
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myprogramming2016 •
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Hello myprogramming2016!
It appears that your post has been cross-posted to another site: https://support.bioconductor.org/p/83394/
This is typically not recommended as it runs the risk of annoying people in both communities.
I am sorry about that. I didn't know about this.
Regarding asking questions on online fora the following paper is of interest: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002202
Considering your question got a reply on the bioconductor forum I will close this thread.
Hello myprogramming2016!
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Answered on Bioconductor forum
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