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searching short peptide sequences against a large database

Hello,

I want to search a set of local databases with short peptide queries. I am interested in finding sequences with high sequence similarity. Which tools are optimal for this? I have noticed that the usual BLAST settings aren't optimal for finding matches to the short queries within larger databases. I have little bioinformatics experience, so any advice is highly appreciated:)

blast alignment sequence peptide
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updated by sdf.ambreen • sdf.ambreen • written by h.mendel • h.mendel

2 answers

i want to extract fasta sequences of different transcripts..which command use to copy these sequences

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written by sdf.ambreen • sdf.ambreen

hi...i want to use CPC in command line i install it and do not know how to get result?

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written by sdf.ambreen • sdf.ambreen

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