randfold-2.0.1 installation problem

Question

[chipseq33]

hello all,

I would like to install randfold-2.0.1 but I get this error squid.h: No such file or directory

gcc -O3 -I. -I/bin/squid-1.9g -L/bin/squid-1.9g -o randfold params.o energy_par.o fold.o fold_vars.o utils.o randfold.c -lm -lsquid 
randfold.c:25:18: fatal error: squid.h: No such file or directory
 #include<squid.h>

I checked /bin/squid-1.9g but there is no squid.h in it.

could you please help me with this ?

thanks

[GenoMax]

You can find the squid library here. Download, configure and make. This will produce the squid.h file. Put that in library path.

[chipseq33]

Thanks! I just did what you kindly suggested. after running "make" I got this error:

cannot find -lbam

any thought?

Thanks

[GenoMax]

Do you have samtools installed? That should have libbam in it.

[chipseq33]

yes, it is installed on our server and it is in my path, too.

[msolanodelacruz]

I have a problem installing randfold

I installed the squid-1.9g library, I modified the Makefile file. And I get the following error:

~/randfold-2.0$ make

gcc -O3 -I/home/bostero/squid-1.9g/ -L/home/bostero/squid-1.9g/ -o randfold params.o energy_par.o fold.o fold_vars.o utils.o randfold.c -lm -lsquid
randfold.c:25:17: fatal error: fold.h: No such file or directory
 #include<fold.h>
          ^
compilation terminated.
Makefile:7: recipe for target 'randfold' failed
make: *** [randfold] Error 1
  

I hope they can help me

best

[robertmukiibi2012]

i am having the exact same issue...any one got the solution for this? thank you

Answer 1

[h.mon]

Answer here:

A: Error in installation of RandFold 2.0