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randfold-2.0.1 installation problem

hello all,

I would like to install randfold-2.0.1 but I get this error squid.h: No such file or directory

gcc -O3 -I. -I/bin/squid-1.9g -L/bin/squid-1.9g -o randfold params.o energy_par.o fold.o fold_vars.o utils.o randfold.c -lm -lsquid 
randfold.c:25:18: fatal error: squid.h: No such file or directory
 #include<squid.h>

I checked /bin/squid-1.9g but there is no squid.h in it.

could you please help me with this ?

thanks

microrna mirdeep2
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updated by h.mon h.mon • written by chipseq33 • chipseq33

You can find the squid library here. Download, configure and make. This will produce the squid.h file. Put that in library path.

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written by GenoMax GenoMax

Thanks! I just did what you kindly suggested. after running "make" I got this error:

cannot find -lbam

any thought?

Thanks

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written by chipseq33 • chipseq33

Do you have samtools installed? That should have libbam in it.

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written by GenoMax GenoMax

yes, it is installed on our server and it is in my path, too.

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written by chipseq33 • chipseq33

I have a problem installing randfold

I installed the squid-1.9g library, I modified the Makefile file. And I get the following error:

~/randfold-2.0$ make

gcc -O3 -I/home/bostero/squid-1.9g/ -L/home/bostero/squid-1.9g/ -o randfold params.o energy_par.o fold.o fold_vars.o utils.o randfold.c -lm -lsquid
randfold.c:25:17: fatal error: fold.h: No such file or directory
 #include<fold.h>
          ^
compilation terminated.
Makefile:7: recipe for target 'randfold' failed
make: *** [randfold] Error 1

I hope they can help me

best

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updated by h.mon h.mon • written by msolanodelacruz • msolanodelacruz

i am having the exact same issue...any one got the solution for this? thank you

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written by robertmukiibi2012 • robertmukiibi2012

1 answer

Answer here:

A: Error in installation of RandFold 2.0

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written by h.mon h.mon

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