Factors influence the secondary or orphan reads proportion
Hi All,
Which factors would affect the ratio/proportion of secondary or orphan reads in the BAM file? library? alignment?
samtools tview ../bam/PC-P-5.bam hg19.fa -p chr1:935977-936090
Thanks.
• 1,546 views
•
link
written
by
Shicheng Guo
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Samtools: exclude secondary and supplementary alignments
written by Alexandra •
-
Samtools consensus for WES files
written by sidjain •
-
Error : samtools tview
written by 1191106787 •
-
Pysam read reference positions and sequence do not match
written by rlorigro •
-
genomeCoverageBed and supplementary alignments
written by giovanni.bacci •
-
Quite low mapping efficient for single-cell methylation sequencing data
written by Shicheng Guo
-
BAM files for RRBS data in ENCODE Project
written by Shicheng Guo
-
Secondary Alignment in BAM flag
written by eudoraleer •
-
R: extract interest nucleotide from BAM files (BS-Seq)
written by Shicheng Guo
-
Meaning Of Colors Used In Samtools Tview
written by deepthithomaskannan
