Cuffcompare Output '-' Versus Fpkm = 0
The Cufflinks manual states that in the 6th column of the Cuffcompare *.tracking output:
A sample not containing a transcript will have a "-" in its entry in the row for that transcript.
This is the column containing this information:
qJ:geneid|transcriptid|FMI|FPKM|conflo|confhi|cov|len
So... What's the difference between an entry of '-' versus q1:CUFF.21|ACYPI065857-RA|0|0.000000|0.000000|0.000000|0.000000|408?
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Lars Juhl Jensen
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User 4409 •
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User 4409 •
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This problem still exists now, although cufflinks has been updated many times.