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Problem In running Modeller for Homology Modelling of Protein

Hello Everyone,

I am Running Modeller for Homology Modelling of Protein but Getting error and not able to resolve the problem please help to sort out this error.

1. mod9.16 model_default.py                   
Could not find platform independent libraries <prefix>
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
'import site' failed; use -v for traceback
FATAL ERROR: Cannot open file model_default.py: No such file or directory

But the model_default.py file is their in my system.

modeller homology modelling protein modelling
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updated by Biostar Biostar • written by Vinay Singh • Vinay Singh

Have you tried to run your original command with -v option as the error suggests? Before you tackle the model_default.py problem there are (potentially) missing libraries to take care of first (which may be fixed by setting $PYTHON_HOME).

• 1 views • link
written by GenoMax GenoMax

Is the model_default.py script in the same folder from which you invoke mod9.16? How did you install modeller?

• 1 views • link
written by Felix_Sim Felix_Sim

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