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Illumina BeadChipSNP PLINK

I have a question regarding Plink and Illumina BeadChip data. I have read and tried the previous posts direction with no success. I do not have access to GenomeStudio. Summary of problem: I have 72 samples each with their own Final_Report.TXT. I only have 1 MAP and 1 PED file from Illumina. The problem is that each Final_Report sample has to be analyzed individually. Is there a way that Plink can recode a map/ped for each txt file? Or does anyone know of a script that can break up the large PED file by sample? /Users/bethbell/Desktop/Screen Shot 2016-05-05 at 12.05.28 PM.png PED File /Users/bethbell/Desktop/Screen Shot 2016-05-05 at 12.06.00 PM.png txt file

TIF!! PED FILE

Final_report.txt

snp
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written by bbell26 • bbell26

You can't directly paste/attach images. Use one of the free image hosting services found in the attach image (Ctrl+G) dialog when you are editing your post.

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written by GenoMax GenoMax

Sorry I will fix that now !

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written by bbell26 • bbell26

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