macs2 callpeak error
0
0
Entering edit mode
8.0 years ago
jolin0701-dy ▴ 100

$ macs2 callpeak -t RIP.bam -c Control.bam -f BAM -g mm -n test -B -q 0.01

INFO @ Wed, 04 May 2016 14:56:39: start X-correlation...

Traceback (most recent call last):

File "/usr/local/bin/macs2", line 617, in <module> main()

File "/usr/local/bin/macs2", line 57, in main run( args )

File "/Library/Python/2.7/site-packages/MACS2/callpeak_cmd.py", line 178, in run opt = options

File "MACS2/PeakModel.pyx", line 108, in MACS2.PeakModel.PeakModel.__init__ (MACS2/PeakModel.c:2438)

File "MACS2/PeakModel.pyx", line 150, in MACS2.PeakModel.PeakModel.build (MACS2/PeakModel.c:3010)

File "MACS2/PeakModel.pyx", line 230, in MACS2.PeakModel.PeakModel.__paired_peak_model (MACS2/PeakModel.c:4266)

ValueError: max() arg is an empty sequence

But when I run the command below, it works fine.

$macs2 callpeak -B -t RIP.bam -c Control.bam --broad -g mm --broad-cutoff 0.1 -n CZ3RIP_vs_CZ1_Input --nomodel --extsize=25 --gsize mm

Any suggestions?

Thanks so much~~

ChIP-Seq • 3.3k views
ADD COMMENT

Login before adding your answer.

Traffic: 1991 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6