RNA-Seq pipeline error
Hi all,
Im getting the following error when i run my rna-seq pipeline please help me figure out what it means:
samtools: bam_stat.c:83: bam_flagstat: Assertion `fp' failed. ./PM24_GTGGCC_L006_R1_001.fastq.sh: line 1: 370261 Aborted (core dumped) samtools flagstat accepted_hits.bam
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
FreeBayes encountered a sudden error
written by emilydolivo97 •
-
Error while running nf-core/rnaseq pipeline
written by eesha28112001 •
-
Issue with FastML Ancestral Sequence Reconstruction
written by CM •
-
Splitting a Genbank file into smaller files
written by Bhushan Dhamale •
-
featureCounts error with 150bp Paired end RNA seq data
written by Ankur B. Sharma •
-
Question: featureCounts error: Assertion `1 != corrected_run' failed.
written by giuseppe0525 •
-
EIGENSOFT - smartpca
written by camlec •
-
Segmentation fault (core dumped) with Samtools index sorted.bam
written by deepak643 •
-
SNPTEST Error - core dumped
written by Caragh •
-
Error with bcftools
written by cassandratzh •
What version of samtools are you using? It's likely that you either had a filesystem error or ran out of memory (due to something else).
Which pipeline are you trying? Please provide more details.
it sppears to be working okay now with more space.