how to find all the promotors and transcription binding sites near to a CpG
I would like to find out how to get information on all the nearby promotors or transcription binding sites for some CpGs given the Illumina 450K CpG identifiers (or alternatively the chromosome and position information). I'm aware there are "bedops closest-features" to provide information on the nearest features, but is there another solution using Windows not linux? And not just the closest features, but all the features in the region? Thanks, BG
• 1,824 views
•
link
written
by
babygirl_25 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Use R to Produce CpG Information
written by Dana •
-
Statistical test or method to test relationship between nearby genes and CpG sites
written by user911111111 •
-
Combining Methylation Microarray data from different platforms
written by James •
-
Determining the transcription factor activators for a particular gene
written by Thoth •
-
Tutorial: Using Bedtools Closest (closestBed) to make distance histograms of protein binding freque…
written by linuxborg2 •
-
How to assign Active Enhancer to every genes within 10 kb region?
written by Bioinformatist Newbie
-
Is there any way to find repetitive DNA in the promoter region for specific gene using bio conductor
written by M K
-
Illumina cpg probe ID conversion to chromosomal location?
written by ahsan.raza.rana •
-
Experimental method to count the mean number of DNA-bound transcription factors
written by Pascal •
-
Is there an informative subset of 450k methylation probes?
written by rmccloskey
