Changing format using awk command
I am trying to convert tab limited "name-seq" format to ">name \n seq\n". I think I can use "awk" function will do the job, but need your help. Thanks for your help!
For example,
From;
CHP2_ABL1_1 ACGACAAGTGGGAGATGGAAC
CHP2_ABL1_2 TAACTAGTCAAGTACTTACCCACTGAAA
TO;
>CHP2_ABL1_1
ACGACAAGTGGGAGATGGAAC
>CHP2_ABL1_2
TAACTAGTCAAGTACTTACCCACTGAAA
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biocyberman
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sp •
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sp •
1 answer
Yes, oh my gawk
gawk -F'\t' '{print ">"$1"\n"$2}' your.tsv
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biocyberman
It is really easy and quick tool for transforming table-like data. I use it a lot. But beware, not to be so short to the level of cryptic. You will curse yourself in the future :D Consider mark my answer "accepted" by the way
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