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DiffBind warning in Galaxy

I am attempting to run DiffBind through Galaxy on peaks (CTCF) called for replicates of K562 and GM12878 and encounter the following issue:

WARNING: ignoring environment value of R_HOME [1] "en_US.UTF-8" Loading required package: GenomicRanges Loading required package: methods Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The fo

Any suggestions?

chip-seq
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written by msulaim • msulaim

2 answers

You can safely ignore that warning.

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written by Devon Ryan Devon Ryan

Whenever I try to view the PDF output, it states, "Failed to load PDF document." I have tried a different browser. The PDF seems to be damaged/corrupt.

"empty" is shown beneath both of the analyses in my history.

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written by msulaim • msulaim

You should contact your Galaxy administrator. Only he/she will be able to look in the logs and diagnose what's going on.

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written by Devon Ryan Devon Ryan

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