This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to generate fasta file from NCBI ref IDs?

I have a group of proteins (100+ with NCBI ref. IDs & gene names), and want to generate a fasta file for this group of protein, any kind recmendation on how to do it?

protein fasta ncbi
• 4,708 views • link
updated by Elisabeth Gasteiger Elisabeth Gasteiger • written by Ivy Ng • Ivy Ng

2 answers

please check this may help you Question: Get Fasta File With Protein Sequences Given Entrez Gene Ids

• 0 views • link
written by kapil.joshi036 kapil.joshi036

Thank you for the suggestion!

• 0 views • link
written by Ivy Ng • Ivy Ng

You can also map your identifiers to UniProtKB at http://www.uniprot.org/uploadlists and then download in FASTA format.

• 0 views • link
written by Elisabeth Gasteiger Elisabeth Gasteiger

Thank you so much!!

• 0 views • link
written by Ivy Ng • Ivy Ng

Log in to answer this question.

More posts like this