I can't make NcbiblastnCommandline work. Creates the outfile but it's empty.
def blast():
from Bio.Blast import NCBIXML
from Bio.Blast.Applications import NcbiblastnCommandline
cline = NcbiblastnCommandline(query="sequence.fasta", db="nt", outfmt=6, out="blast.tbl")
outfile = open("blast.tbl", "w")
outfile.write(cline.parse())
outfile.close()
cline.close()
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Markus
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madeltutor •
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madeltutor •
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