Simple question: obtaining GO terminology utilizing NCBI GI's
Guys,
Simple question to many of you, but I have made a specific nr_viridiplantae database for blastx using the nr database and dbaliastool on ncbi+.
What files can I use in order to get GO classifications using the sequence GI's of my best blast hits for each sequence.Also what unix command would be useful for this? I'm assuming a grep option?
New to syntax and although I'm learning, I have in my sites to master GO classification in the next day or two.So any direction or help is greatly appreciated!
Thanks!
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2 answers
Not exactly what you requested but this may help: https://www.blast2go.com
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Takes too long compared to a server set-up..
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