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Downloading the UCSC gene annotation files

Hello,

Do you know maybe how to download the UCSC annotation files (with genomes of Campylobacter jejuni, Campylobacter jejuni 81-176, Campylobacter jejuni RM1221) from UCSC browser?

rna-seq ucsc
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updated by Emily Emily • written by kaczor.karolina • kaczor.karolina

2 answers

Visit the UCSC Table Browser for Archaea and pick your genome and assembly from the respective pull-down menus.

Select the region of interest, group and track for the annotations of interest, select the output format and output name, and finally click get output to begin a data download.

There may also be options to retrieve database tables via mysql. Try posting your question to the UCSC Genome Browser discussion group to see if this is available.

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written by Alex Reynolds Alex Reynolds

The last answer of this post can provide you option details in the UCSC table browser:
How to download Gene annotations.gtf file for Drosophila melanogaster

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written by CandiceChuDVM CandiceChuDVM

Not applicable in case of original question. The link in the answer you point to is only applicable for eukaryotic/special genomes available in UCSC.

@Alex has the correct link for prokaryotic UCSC table browser in his answer.

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written by GenoMax GenoMax

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