I am just trying to use the gffToVcf.py module. I have already run the cmd to set up the environmental variables. I know that my python_home environment is mapped.

I can successfully run the setup script.

. /data2/labdata/mbcf/pacbio/software/smrtanalysis/etc/setup.sh

But when I try to run:

/data2/labdata/mbcf/pacbio/software/smrtanalysis/analysis/bin/gffToVcf.py --help

- Traceback (most recent call last):
- File "/data2/labdata/mbcf/pacbio/software/smrtanalysis/analysis/bin/gffToVcf.py", line 5, in <module>
    pkg_resources.run_script('pbpy==0.1', 'gffToVcf.py')
- File "/usr/local/biotools/python/2.7/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg/pkg_resources.py", line 489, in run_script
    keys.append(dist.key)
- File "/usr/local/biotools/python/2.7/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg/pkg_resources.py", line 1207, in run_script
    def __init__(self,module):
- File "/data2/labdata/mbcf/pacbio/software/smrtanalysis-1.3.0/analysis/lib/python2.7/pbpy-0.1-py2.7.egg/EGG-INFO/s                         cripts/gffToVcf.py", line 8, in <module>
    from pbpy.io.GffIO import *
- File "/data2/labdata/mbcf/pacbio/software/smrtanalysis/analysis/lib/python2.7/pbpy-0.1-py2.7.egg/pbpy/io/GffIO.py", line 5, in <module>
    import gzip
- File "/usr/local/biotools/python/2.7/lib/python2.7/gzip.py", line 10, in <module>
    import io
- File "/usr/local/biotools/python/2.7/lib/python2.7/io.py", line 60, in <module>
    import _io
- ImportError: /usr/local/biotools/python/2.7/lib/python2.7/lib-dynload/_io.so: undefined symbol: PyUnicodeUCS2_FromObject

I've been playing with environmental variables, and I can't seem to figure out what it is that I'm missing. I'm hoping that it's something obvious, and I'm just missing it.