Hi everyone,

When I was training snap using the gff3 file generated from the first round of maker annotation, I typed in the command line as below:

maker2zff XXX.gff fathom -categorize 1000 genome.ann genome.dna

But I got the warning message as below:

.................... ZOE WARNING (from fathom): zoeNewDNA editing illegal symbol '0' to 'N' in scf7180000009656 at 1091660/32943391 ZOE WARNING (from fathom): zoeNewDNA editing illegal symbol ';' to 'N' in scf7180000009656 at 1091661/32943391 ZOE WARNING (from fathom): zoeNewDNA editing illegal symbol 'P' to 'N' in scf7180000009656 at 1091662/32943391 ZOE WARNING (from fathom): zoeNewDNA editing illegal symbol 'e' to 'N' in scf7180000009656 at 1091665/32943391 ZOE WARNING (from fathom): zoeNewDNA editing illegal symbol '=' to 'N' in scf7180000009656 at 1091668/32943391 .................

Does any one know what's happening? Thanks.