Hi all
In an analysis framework, I need to calculate average expression of all genes within each chromosomal bin (let say size of each bin is 10kb). Doing this in bash using gff3 file is easy, but genes which overlap the ends of two consecutive bins are difficult to place. Can anyone point me to a tool/perl script that will manage to do this?
Thanks.
Do you want bin the genome in to 10kb or bin the gene coordinates ?
I want to bin each chromosome in 10 kb bins and pull all the genes within each bin