Genotype notations for complete genomics data
I am working with whole genome data from complete genomics. I have genotype data where I am confused with this genotype notation, "1N". I know 01 is heterozygous, 00 is homozygous reference, 11 homozygous non-reference, but could not figure out what NN and 1N mean. Can someone please clarify?
1 answer
The post below is about the names of individual genotypes.
69 Genomes Data Interpretation
" NN=NoCalls in both alleles, 1N=AlternativeAllele+NoCall "
Thanks to JC!
Some of old post could not be read yesterday, so I've added additional w...
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natasha.sernova
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Never seen anything like this before, sorry. Maybe similar to https://www.biostars.org/p/166758/?