I would like to present a database called KGCAK, which is constructed for investigating the phylogenetic relationships among species and the genome complexity from ~8,000 genomes that include genome sequences of diverse life forms (viruses, prokaryotes, protists, animals, and plants) and cellular organelles of eukaryotic lineages. It builds phylogeny based on genomic elements in an alignment-free fashion and provides in-depth data processing enabling users to compare the complexity of genome sequences based on K-mer distribution.
https://github.com/NextGenBioinformatics/KGCAK
Reference: Dapeng Wang, Jiayue Xu and Jun Yu. KGCAK: A K-mer based database for genome-wide phylogeny and complexity evaluation. Biology Direct. 2015, 10:53.
Should you have any questions when using this tool, please do not hesitate to contact me by wangdp123@gmail.com
Dapeng
