Question

Samtools 1.3 mpileup result < >

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8.2 years ago

yanweng ▴ 80

I am using samtools(version 1.3) mpileup to get the mapping information of every position. But I cannot understand the < and > in the fourth column of the result. I would appreciate if someone can explain it here.

Here is what I get:

chr1    546478  A       1       >       E
chr1    1345545    a    4    ><<,    6EEE

RNA-Seq sequencing next-gen samtools pileup • 2.3k views

ADD COMMENT • link updated 5.6 years ago by Ram 43k • written 8.2 years ago by yanweng ▴ 80

Ram · Answer 1 · 2016-02-17

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8.2 years ago

alebuenosm ▴ 20

I think the answer was already provided in this post

ADD COMMENT • link updated 5.6 years ago by Ram 43k • written 8.2 years ago by alebuenosm ▴ 20

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You are right!

ADD REPLY • link 8.2 years ago by yanweng ▴ 80

Ram · Answer 2 · 2016-02-17

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8.2 years ago

yanweng ▴ 80

Looks like they are "unseen alle". I just found some explanation online

ADD COMMENT • link updated 5.6 years ago by Ram 43k • written 8.2 years ago by yanweng ▴ 80

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Never mind. It's wrong

ADD REPLY • link 8.2 years ago by yanweng ▴ 80