Gene Ontology programatically given a list of gene IDs.
Hi,
I am looking at some sequence similarity networks in Gephi. I was wondering if someone could point me in the direction to establishing GO terms based on genes in the network and overlaying it on Gephi network?
Gene IDs are varying in type, as I have got them from a single source. Many will have Ensembl IDs.
Something command line and free is ideal.
Thanks,
R
1 answer
clusterProfiler from R Bioconductor bitr function might have the ability to do this.
Log in to answer this question.
More posts like this
-
GO and KEGG enrichment analysis for non-model organism
written by Shakunthala Natarajan •
-
Cytoscape: Advice on best analysis methods for PPI network
written by Haley •
-
Recommendations for Whole Genome Sequencing Workflow
written by jrleary
-
Scale-free networks are rare
written by The Last Word
-
What if a network is not scale-free?
written by Arindam Ghosh
-
Cytoscape ClusterMaker2. Use Expression Matrix, Network needed?
written by Benni •
-
Working with big network data
written by moranr
-
what are good publications in gene regulatory network domain which need implementation ?
written by cjgunase •
-
Intuitive platform for mapping SNPs to eQTL's
written by Lou •
-
How To Match Genes That Were Labeled Via Different Naming/Identification Standards
written by TitoPullo
